Yu Nakashima

Search results

• Crystal structure of lasso peptide epimerase MslH D11A mutant

  Nakashima, Y. (Contributor), Kawakami, A. (Contributor), Ogasawara, Y. (Contributor), Maeki, M. (Contributor), Tokeshi, M. (Contributor), Dairi, T. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/06/21

  DOI: 10.2210/pdb8GQB/pdb, https://www.wwpdb.org/pdb?id=pdb_00008gqb

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-(3-phenylpropyl)-2-oxoglutarate

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1J/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1j

  Dataset

• TKS-L190G mutant from Cannabis sativa in complex with lauroyl-CoA

  Lee, Y.-E. (Contributor), Nakashima, Y. (Contributor), Kodama, T. (Contributor), Chen, X. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2022/02/02

  DOI: 10.2210/pdb7W6G/pdb, https://www.wwpdb.org/pdb?id=pdb_00007w6g

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-(carboxycarbonyl)cyclopentane-1-carboxylic acid, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1Q/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1q

  Dataset

• Crystal structure of CdpNPT in complex with harmane

  Hamdy, S. A. (Contributor), Kodama, T. (Contributor), Nakashima, Y. (Contributor), Han, X. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/04/05

  DOI: 10.2210/pdb7Y3V/pdb, https://www.wwpdb.org/pdb?id=pdb_00007y3v

  Dataset

• Polyketide cyclase OAC-F24I mutant from Cannabis sativa in complex with 6-nonylresorcylic acid

  Lee, Y.-E. (Contributor), Nakashima, Y. (Contributor), Kodama, T. (Contributor), Chen, X. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2022/02/02

  DOI: 10.2210/pdb7W6F/pdb, https://www.wwpdb.org/pdb?id=pdb_00007w6f

  Dataset

• Crystal structure of lasso peptide epimerase MslH

  Nakashima, Y. (Contributor), Kawakami, A. (Contributor), Ogasawara, Y. (Contributor), Maeki, M. (Contributor), Tokeshi, M. (Contributor), Dairi, T. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/06/21

  DOI: 10.2210/pdb8GQ9/pdb, https://www.wwpdb.org/pdb?id=pdb_00008gq9

  Dataset

• Aspartyl/Asparaginyl beta-hydroxylase (AspH) H725A in complex with Factor X peptide fragment (39mer-4Ser)

  Brasnett, A. (Contributor), Pfeffer, I. (Contributor), Brewitz, L. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Tumber, A. (Contributor), McDonough, M. A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/06/30

  DOI: 10.2210/pdb7E6J/pdb, https://www.wwpdb.org/pdb?id=pdb_00007e6j

  Dataset

• HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH 2-OXOGLUTARATE (2OG) AND HIF-2 ALPHA CODD (523-542)

  Figg, W. D. (Contributor), Fiorini, G. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Tumber, A. (Contributor), McDonough, M. A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2022/11/16

  DOI: 10.2210/pdb7Q5X/pdb, https://www.wwpdb.org/pdb?id=pdb_00007q5x

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-methyl-2-oxoglutarate, AND TANKYRASE-2 (TNKS2) FRAGMENT PEPTIDE (21-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1S/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1s

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-((9,9-dimethyl-9H-fluoren-2-yl)methyl)-2-oxoglutarate

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1K/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1k

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 4-propyl-2-oxoglutarate, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1P/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1p

  Dataset

• Crystal structure of CdpNPT in complex with harmol

  Hamdy, S. A. (Contributor), Kodama, T. (Contributor), Nakashima, Y. (Contributor), Han, X. (Contributor), Matsui, T. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/04/05

  DOI: 10.2210/pdb7XVJ/pdb, https://www.wwpdb.org/pdb?id=pdb_00007xvj

  Dataset

• HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in Complex with 1-(6-morpholinopyrimidin-4-yl)-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-5-ol (Molidustat)

  Figg, W. D. (Contributor), McDonough, M. A. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Zhang, Z. (Contributor), Holt-Martyn, J. P. (Contributor), Krajnc, A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/04/07

  DOI: 10.2210/pdb6ZBO/pdb, https://www.wwpdb.org/pdb?id=pdb_00006zbo

  Dataset

• Polyketide cyclase OAC-F24I mutant from Cannabis sativa in complex with olivetolic acid

  Lee, Y.-E. (Contributor), Nakashima, Y. (Contributor), Kodama, T. (Contributor), Chen, X. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2022/02/02

  DOI: 10.2210/pdb7W6D/pdb, https://www.wwpdb.org/pdb?id=pdb_00007w6d

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-methyl-2-oxoglutarate, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1N/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1n

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 4-ethyl-2-oxoglutarate, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1O/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1o

  Dataset

• HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH N-OXALYLGLYCINE (NOG) AND HIF-2 ALPHA CODD (523-542)

  Figg, W. D. (Contributor), Fiorini, G. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Tumber, A. (Contributor), McDonough, M. A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2022/11/16

  DOI: 10.2210/pdb7Q5V/pdb, https://www.wwpdb.org/pdb?id=pdb_00007q5v

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-propyl-2-oxoglutarate

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1M/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1m

  Dataset

• Polyketide cyclase OAC-F24I mutant from Cannabis sativa in complex with 6-heptylresorcylic acid

  Lee, Y.-E. (Contributor), Nakashima, Y. (Contributor), Kodama, T. (Contributor), Chen, X. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2022/02/02

  DOI: 10.2210/pdb7W6E/pdb, https://www.wwpdb.org/pdb?id=pdb_00007w6e

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-methyl-2-oxoglutarate

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1L/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1l

  Dataset

• Crystal structure of lasso peptide epimerase MslH in complexed with precursor peptide analog MslAdeltaW21

  Nakashima, Y. (Contributor), Kawakami, A. (Contributor), Ogasawara, Y. (Contributor), Maeki, M. (Contributor), Tokeshi, M. (Contributor), Dairi, T. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/06/21

  DOI: 10.2210/pdb8GQA/pdb, https://www.wwpdb.org/pdb?id=pdb_00008gqa

  Dataset

• HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in complex with tert-butyl 6-(5-hydroxy-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-1-yl)nicotinate (IOX4)

  Figg, W. D. (Contributor), McDonough, M. A. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Zhang, Z. (Contributor), Holt-Martyn, J. P. (Contributor), Krajnc, A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/04/07

  DOI: 10.2210/pdb6ZBN/pdb, https://www.wwpdb.org/pdb?id=pdb_00006zbn

  Dataset

• Diarylpentanoid-producing polyketide synthase (N199F mutant)

  Wang, X.-H. (Contributor), Gao, B.-W. (Contributor), Nakashima, Y. (Contributor), Mori, T. (Contributor), Zhang, Z.-X. (Contributor), Kodama, T. (Contributor), Lee, Y.-E. (Contributor), Zhang, Z.-K. (Contributor), Wong, C.-P. (Contributor), Liu, Q.-Q. (Contributor), Qi, B.-W. (Contributor), Wang, J. (Contributor), Li, J. (Contributor), Liu, X. (Contributor), Abe, I. (Contributor), Morita, H. (Contributor), Tu, P.-F. (Contributor) & Shi, S.-P. (Contributor), Protein Data Bank (PDB), 2022/01/19

  DOI: 10.2210/pdb7FFG/pdb, https://www.wwpdb.org/pdb?id=pdb_00007ffg

  Dataset

• Diarylpentanoid-producing polyketide synthase (N199L mutant)

  Wang, X.-H. (Contributor), Gao, B.-W. (Contributor), Nakashima, Y. (Contributor), Mori, T. (Contributor), Zhang, Z.-X. (Contributor), Kodama, T. (Contributor), Lee, Y.-E. (Contributor), Zhang, Z.-K. (Contributor), Wong, C.-P. (Contributor), Liu, Q.-Q. (Contributor), Qi, B.-W. (Contributor), Wang, J. (Contributor), Li, J. (Contributor), Liu, X. (Contributor), Abe, I. (Contributor), Morita, H. (Contributor), Tu, P.-F. (Contributor) & Shi, S.-P. (Contributor), Protein Data Bank (PDB), 2022/01/19

  DOI: 10.2210/pdb7FFH/pdb, https://www.wwpdb.org/pdb?id=pdb_00007ffh

  Dataset