Yu Nakashima

Search results

• Aspartyl/Asparaginyl beta-hydroxylase (AspH) H725A in complex with Factor X peptide fragment (39mer-4Ser)

  Brasnett, A. (Contributor), Pfeffer, I. (Contributor), Brewitz, L. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Tumber, A. (Contributor), McDonough, M. A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/06/30

  DOI: 10.2210/pdb7E6J/pdb, https://www.wwpdb.org/pdb?id=pdb_00007e6j

  Dataset

• Crystal structure of CdpNPT in complex with harmane

  Hamdy, S. A. (Contributor), Kodama, T. (Contributor), Nakashima, Y. (Contributor), Han, X. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/04/05

  DOI: 10.2210/pdb7Y3V/pdb, https://www.wwpdb.org/pdb?id=pdb_00007y3v

  Dataset

• Crystal structure of CdpNPT in complex with harmol

  Hamdy, S. A. (Contributor), Kodama, T. (Contributor), Nakashima, Y. (Contributor), Han, X. (Contributor), Matsui, T. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/04/05

  DOI: 10.2210/pdb7XVJ/pdb, https://www.wwpdb.org/pdb?id=pdb_00007xvj

  Dataset

• Crystal structure of lasso peptide epimerase MslH

  Nakashima, Y. (Contributor), Kawakami, A. (Contributor), Ogasawara, Y. (Contributor), Maeki, M. (Contributor), Tokeshi, M. (Contributor), Dairi, T. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/06/21

  DOI: 10.2210/pdb8GQ9/pdb, https://www.wwpdb.org/pdb?id=pdb_00008gq9

  Dataset

• Crystal structure of lasso peptide epimerase MslH D11A mutant

  Nakashima, Y. (Contributor), Kawakami, A. (Contributor), Ogasawara, Y. (Contributor), Maeki, M. (Contributor), Tokeshi, M. (Contributor), Dairi, T. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/06/21

  DOI: 10.2210/pdb8GQB/pdb, https://www.wwpdb.org/pdb?id=pdb_00008gqb

  Dataset

• Crystal structure of lasso peptide epimerase MslH in complexed with precursor peptide analog MslAdeltaW21

  Nakashima, Y. (Contributor), Kawakami, A. (Contributor), Ogasawara, Y. (Contributor), Maeki, M. (Contributor), Tokeshi, M. (Contributor), Dairi, T. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2023/06/21

  DOI: 10.2210/pdb8GQA/pdb, https://www.wwpdb.org/pdb?id=pdb_00008gqa

  Dataset

• Diarylpentanoid-producing polyketide synthase (A210E mutant)

  Wang, X.-H. (Contributor), Gao, B.-W. (Contributor), Nakashima, Y. (Contributor), Mori, T. (Contributor), Zhang, Z.-X. (Contributor), Kodama, T. (Contributor), Lee, Y.-E. (Contributor), Zhang, Z.-K. (Contributor), Wong, C.-P. (Contributor), Liu, Q.-Q. (Contributor), Qi, B.-W. (Contributor), Wang, J. (Contributor), Li, J. (Contributor), Liu, X. (Contributor), Abe, I. (Contributor), Morita, H. (Contributor), Tu, P.-F. (Contributor) & Shi, S.-P. (Contributor), Protein Data Bank (PDB), 2022/01/19

  DOI: 10.2210/pdb7FFC/pdb, https://www.wwpdb.org/pdb?id=pdb_00007ffc

  Dataset

• Diarylpentanoid-producing polyketide synthase (F340W mutant)

  Wang, X.-H. (Contributor), Gao, B.-W. (Contributor), Nakashima, Y. (Contributor), Mori, T. (Contributor), Zhang, Z.-X. (Contributor), Kodama, T. (Contributor), Lee, Y.-E. (Contributor), Zhang, Z.-K. (Contributor), Wong, C.-P. (Contributor), Liu, Q.-Q. (Contributor), Qi, B.-W. (Contributor), Wang, J. (Contributor), Li, J. (Contributor), Liu, X. (Contributor), Abe, I. (Contributor), Morita, H. (Contributor), Tu, P.-F. (Contributor) & Shi, S.-P. (Contributor), Protein Data Bank (PDB), 2022/01/19

  DOI: 10.2210/pdb7FFI/pdb, https://www.wwpdb.org/pdb?id=pdb_00007ffi

  Dataset

• Diarylpentanoid-producing polyketide synthase (N199F mutant)

  Wang, X.-H. (Contributor), Gao, B.-W. (Contributor), Nakashima, Y. (Contributor), Mori, T. (Contributor), Zhang, Z.-X. (Contributor), Kodama, T. (Contributor), Lee, Y.-E. (Contributor), Zhang, Z.-K. (Contributor), Wong, C.-P. (Contributor), Liu, Q.-Q. (Contributor), Qi, B.-W. (Contributor), Wang, J. (Contributor), Li, J. (Contributor), Liu, X. (Contributor), Abe, I. (Contributor), Morita, H. (Contributor), Tu, P.-F. (Contributor) & Shi, S.-P. (Contributor), Protein Data Bank (PDB), 2022/01/19

  DOI: 10.2210/pdb7FFG/pdb, https://www.wwpdb.org/pdb?id=pdb_00007ffg

  Dataset

• Diarylpentanoid-producing polyketide synthase (N199L mutant)

  Wang, X.-H. (Contributor), Gao, B.-W. (Contributor), Nakashima, Y. (Contributor), Mori, T. (Contributor), Zhang, Z.-X. (Contributor), Kodama, T. (Contributor), Lee, Y.-E. (Contributor), Zhang, Z.-K. (Contributor), Wong, C.-P. (Contributor), Liu, Q.-Q. (Contributor), Qi, B.-W. (Contributor), Wang, J. (Contributor), Li, J. (Contributor), Liu, X. (Contributor), Abe, I. (Contributor), Morita, H. (Contributor), Tu, P.-F. (Contributor) & Shi, S.-P. (Contributor), Protein Data Bank (PDB), 2022/01/19

  DOI: 10.2210/pdb7FFH/pdb, https://www.wwpdb.org/pdb?id=pdb_00007ffh

  Dataset

• Diarylpentanoid-producing polyketide synthase from Aquilaria sinensis

  Wang, X.-H. (Contributor), Gao, B.-W. (Contributor), Nakashima, Y. (Contributor), Mori, T. (Contributor), Zhang, Z.-X. (Contributor), Kodama, T. (Contributor), Lee, Y.-E. (Contributor), Zhang, Z.-K. (Contributor), Wong, C.-P. (Contributor), Liu, Q.-Q. (Contributor), Qi, B.-W. (Contributor), Wang, J. (Contributor), Li, J. (Contributor), Liu, X. (Contributor), Abe, I. (Contributor), Morita, H. (Contributor), Tu, P.-F. (Contributor) & Shi, S.-P. (Contributor), Protein Data Bank (PDB), 2022/01/19

  DOI: 10.2210/pdb7FFA/pdb, https://www.wwpdb.org/pdb?id=pdb_00007ffa

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-(carboxycarbonyl)cyclopentane-1-carboxylic acid, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1Q/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1q

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-methyl-2-oxoglutarate, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1N/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1n

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-methyl-2-oxoglutarate, AND TANKYRASE-2 (TNKS2) FRAGMENT PEPTIDE (21-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1S/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1s

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 4-ethyl-2-oxoglutarate, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1O/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1o

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 4-propyl-2-oxoglutarate, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1P/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1p

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-((9,9-dimethyl-9H-fluoren-2-yl)methyl)-2-oxoglutarate

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1K/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1k

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-(3-phenylpropyl)-2-oxoglutarate

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1J/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1j

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-methyl-2-oxoglutarate

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1L/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1l

  Dataset

• FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-propyl-2-oxoglutarate

  Nakashima, Y. (Contributor), Brewitz, L. (Contributor), Tumber, A. (Contributor), Salah, E. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/08/25

  DOI: 10.2210/pdb7A1M/pdb, https://www.wwpdb.org/pdb?id=pdb_00007a1m

  Dataset

• HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in Complex with 1-(6-morpholinopyrimidin-4-yl)-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-5-ol (Molidustat)

  Figg, W. D. (Contributor), McDonough, M. A. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Zhang, Z. (Contributor), Holt-Martyn, J. P. (Contributor), Krajnc, A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/04/07

  DOI: 10.2210/pdb6ZBO/pdb, https://www.wwpdb.org/pdb?id=pdb_00006zbo

  Dataset

• HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH 2-OXOGLUTARATE (2OG) AND HIF-2 ALPHA CODD (523-542)

  Figg, W. D. (Contributor), Fiorini, G. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Tumber, A. (Contributor), McDonough, M. A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2022/11/16

  DOI: 10.2210/pdb7Q5X/pdb, https://www.wwpdb.org/pdb?id=pdb_00007q5x

  Dataset

• HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH N-OXALYLGLYCINE (NOG) AND HIF-2 ALPHA CODD (523-542)

  Figg, W. D. (Contributor), Fiorini, G. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Tumber, A. (Contributor), McDonough, M. A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2022/11/16

  DOI: 10.2210/pdb7Q5V/pdb, https://www.wwpdb.org/pdb?id=pdb_00007q5v

  Dataset

• HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in complex with tert-butyl 6-(5-hydroxy-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-1-yl)nicotinate (IOX4)

  Figg, W. D. (Contributor), McDonough, M. A. (Contributor), Chowdhury, R. (Contributor), Nakashima, Y. (Contributor), Zhang, Z. (Contributor), Holt-Martyn, J. P. (Contributor), Krajnc, A. (Contributor) & Schofield, C. J. (Contributor), Protein Data Bank (PDB), 2021/04/07

  DOI: 10.2210/pdb6ZBN/pdb, https://www.wwpdb.org/pdb?id=pdb_00006zbn

  Dataset

• Polyketide cyclase OAC-F24I mutant from Cannabis sativa in complex with 6-heptylresorcylic acid

  Lee, Y.-E. (Contributor), Nakashima, Y. (Contributor), Kodama, T. (Contributor), Chen, X. (Contributor) & Morita, H. (Contributor), Protein Data Bank (PDB), 2022/02/02

  DOI: 10.2210/pdb7W6E/pdb, https://www.wwpdb.org/pdb?id=pdb_00007w6e

  Dataset