Research output per year
Research output per year
Research output
- 48 Article
- 48 results
Search results
-
2024
Thermodynamics of oligomerization and Helix-to-sheet structural transition of amyloid β-protein on anionic phospholipid vesicles
Ikeda, K., Sugiura, Y., Nakao, H. & Nakano, M., 2024/07/01, In: Biophysical Chemistry. 310, p. 107248Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
2023
Amphipathic peptide-phospholipid nanofibers: Kinetics of fiber formation and molecular transfer between assemblies.
Shimizu, C., Ikeda, K., Nakao, H. & Nakano, M., 2023/02/26, In: Biophysical Chemistry. 296, p. 106985-106985 1 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Fine-Tuning and Enhancement of pH-Dependent Membrane Permeation of Cyclic Peptides by Utilizing Noncanonical Amino Acids with Extended Side Chains.
Matsuda, M., Ikeda, K., Kameda, T., Nakao, H. & Nakano, M., 2023/05/15, In: Journal of Medicinal Chemistry.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Impact of transmembrane peptides on individual lipid motions and collective dynamics of lipid bilayers
Translated title of the contribution :Impact of transmembrane peptides on individual lipid motions and collective dynamics of lipid bilayers Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
Rational design of phase separating peptides based on phase separating protein sequence of p53
Kamagata, K., Hando, A., Ariefai, M., Iwaki, N., Kanbayashi, S., Koike, R. & Ikeda, K., 2023/12, In: Scientific Reports. 13, 1, 5648.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
The Nanometer-Scale Proximity of Bilayers Facilitates Intermembrane Lipid Transfer.
Miyajima, A., Nakao, H., Ikeda, K. & Nakano, M., 2023/04/28, In: The journal of physical chemistry letters. p. 4172-4178 7 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
2022
Energetic and Structural Insights into Phospholipid Transfer from Membranes with Different Curvatures by Time-Resolved Neutron Scattering
Nakano, M., Nakao, H., Yoshida, S., Fukuda, M., Imai, M. & Ikeda, K., 2022/07/07, In: Journal of Physical Chemistry Letters. 13, 26, p. 6024-6030Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
Improvement of Thermal Stability of Amphipathic Peptide–Phospholipid Nanodiscs via Lateral Association of α-Helices by Disulfide Cross-Linking
Anada, C., Ikeda, K., Nakao, H. & Nakano, M., 2022/06/07, In: Langmuir. 38, 22, p. 6977-6983Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
Kinetic Mechanism of Amyloid-β-(16–22) Peptide Fibrillation
Yamazaki, M., Ikeda, K., Kameda, T., Nakao, H. & Nakano, M., 2022/07/07, In: Journal of Physical Chemistry Letters. 13, 26, p. 6031-6036Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
Rational peptide design for regulating liquid–liquid phase separation on the basis of residue–residue contact energy
Kamagata, K., Ariefai, M., Takahashi, H., Hando, A., Subekti, D. R. G., Ikeda, K., Hirano, A. & Kameda, T., 2022/12, In: Scientific Reports. 12, 1, 13718.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
Thermodynamics for the Self-Assembly of Alkylated Peptides
Sato, A., Ikeda, K., Nakao, H. & Nakano, M., 2022/09/27, In: Langmuir. 38, 38, p. 11801-11809 9 p.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
2021
Amphipathic Peptide-Phospholipid Nanofibers: Phospholipid Specificity and Dependence on Concentration and Temperature
Ikeda, K., Horiuchi, A., Yoshino, M., Shimizu, C., Nakao, H. & Nakano, M., 2021/01/19, In: Langmuir. 37, 2, p. 713-721 9 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Biophysical parameters of the Sec14 phospholipid exchange cycle – Effect of lipid packing in membranes
Sugiura, T., Nakao, H., Ikeda, K., Khan, D., Nile, A. H., Bankaitis, V. A. & Nakano, M., 2021/01/01, In: Biochimica et Biophysica Acta - Biomembranes. 1863, 1, 183450.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Characterization of design grammar of peptides for regulating liquid droplets and aggregates of FUS
Kamagata, K., Chiba, R., Kawahata, I., Iwaki, N., Kanbayashi, S., Maeda, K., Takahashi, H., Hirano, A., Fukunaga, K., Ikeda, K. & Kameda, T., 2021/12, In: Scientific Reports. 11, 1, 6643.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Development of membrane-insertable lipid scrambling peptides: A time-resolved small-angle neutron scattering study
Nakao, H., Kimura, Y., Sakai, A., Ikeda, K. & Nakano, M., 2021/03/01, In: Structural Dynamics. 8, 2, 024301.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Temperature- and composition-dependent conformational transitions of amphipathic peptide–phospholipid nanodiscs
Anada, C., Ikeda, K., Egawa, A., Fujiwara, T., Nakao, H. & Nakano, M., 2021/04/15, In: Journal of Colloid and Interface Science. 588, p. 522-530 9 p.Research output: Contribution to journal › Article › peer-review
18 Scopus citations -
2020
G Protein-Coupled Glutamate and GABA Receptors Form Complexes and Mutually Modulate Their Signals
Sakairi, H., Kamikubo, Y., Abe, M., Ikeda, K., Ichiki, A., Tabata, T., Kano, M. & Sakurai, T., 2020/02/19, In: ACS Chemical Neuroscience. 11, 4, p. 567-578 12 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Pro-inflammatory macrophages coupled with glycolysis remodel adipose vasculature by producing platelet-derived growth factor-B in obesity
Onogi, Y., Wada, T., Okekawa, A., Matsuzawa, T., Watanabe, E., Ikeda, K., Nakano, M., Kitada, M., Koya, D., Tsuneki, H. & Sasaoka, T., 2020/12/01, In: Scientific Reports. 10, 1, 670.Research output: Contribution to journal › Article › peer-review
Open Access26 Scopus citations -
Structural Feature of Lipid Scrambling Model Transmembrane Peptides: Same-Side Positioning of Hydrophilic Residues and Their Deeper Position
Nakao, H., Sugimoto, Y., Ikeda, K., Saito, H. & Nakano, M., 2020/03/05, In: Journal of Physical Chemistry Letters. 11, 5, p. 1662-1667 6 p.Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
2019
Biophysical Parameters of the Sec14 Phospholipid Exchange Cycle
Sugiura, T., Takahashi, C., Chuma, Y., Fukuda, M., Yamada, M., Yoshida, U., Nakao, H., Ikeda, K., Khan, D., Nile, A. H., Bankaitis, V. A. & Nakano, M., 2019/01/08, In: Biophysical Journal. 116, 1, p. 92-103 12 p.Research output: Contribution to journal › Article › peer-review
Open Access22 Scopus citations -
Toxic Amyloid Tape: A Novel Mixed Antiparallel/Parallel β-Sheet Structure Formed by Amyloid β-Protein on GM1 Clusters
Okada, Y., Okubo, K., Ikeda, K., Yano, Y., Hoshino, M., Hayashi, Y., Kiso, Y., Itoh-Watanabe, H., Naito, A. & Matsuzaki, K., 2019/01/16, In: ACS Chemical Neuroscience. 10, 1, p. 563-572 10 p.Research output: Contribution to journal › Article › peer-review
40 Scopus citations -
2018
Characterization of human ATP-binding cassette protein subfamily D reconstituted into proteoliposomes
Okamoto, T., Kawaguchi, K., Watanabe, S., Agustina, R., Ikejima, T., Ikeda, K., Nakano, M., Morita, M. & Imanaka, T., 2018/02/19, In: Biochemical and Biophysical Research Communications. 496, 4, p. 1122-1127 6 p.Research output: Contribution to journal › Article › peer-review
24 Scopus citations -
Discovery of a sugar-based nanoparticle universally existing in boiling herbal water extracts and their immunostimulant effect
Iitsuka, H., Koizumi, K., Inujima, A., Suzaki, M., Mizuno, Y., Takeshita, Y., Eto, T., Otsuka, Y., Shimada, R., Liu, M., Ikeda, K., Nakano, M., Suzuki, R., Maruyama, K., Zhou, Y., Sakurai, H. & Shibahara, N., 2018/12, In: Biochemistry and Biophysics Reports. 16, p. 62-68 7 p.Research output: Contribution to journal › Article › peer-review
Open Access22 Scopus citations -
Effects of Hydrophilic Residues and Hydrophobic Length on Flip-Flop Promotion by Transmembrane Peptides
Nakao, H., Hayashi, C., Ikeda, K., Saito, H., Nagao, H. & Nakano, M., 2018/04/19, In: Journal of Physical Chemistry B. 122, 15, p. 4318-4324 7 p.Research output: Contribution to journal › Article › peer-review
15 Scopus citations -
Formation of asymmetric vesicles via phospholipase D-mediated transphosphatidylation
Takaoka, R., Kurosaki, H., Nakao, H., Ikeda, K. & Nakano, M., 2018/02, In: Biochimica et Biophysica Acta - Biomembranes. 1860, 2, p. 245-249 5 p.Research output: Contribution to journal › Article › peer-review
Open Access27 Scopus citations -
Veratridine binding to a transmembrane helix of sodium channel Nav1.4 determined by solid-state NMR
Niitsu, A., Egawa, A., Ikeda, K., Tachibana, K. & Fujiwara, T., 2018/11/15, In: Bioorganic and Medicinal Chemistry. 26, 21, p. 5644-5653 10 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
2017
Nanodisc-to-Nanofiber Transition of Noncovalent Peptide-Phospholipid Assemblies
Ikeda, K., Horiuchi, A., Egawa, A., Tamaki, H., Fujiwara, T. & Nakano, M., 2017/06/30, In: ACS Omega. 2, 6, p. 2935-2944 10 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
2016
Energetics of the Mixing of Phospholipids in Bilayers Determined Using Vesicle Solubilization
Ikeda, K. & Nakano, M., 2016/12/13, In: Langmuir. 32, 49, p. 13270-13275 6 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Formation of size-controlled, denaturation-resistant lipid nanodiscs by an amphiphilic self-polymerizing peptide
Kondo, H., Ikeda, K. & Nakano, M., 2016/10/01, In: Colloids and Surfaces B: Biointerfaces. 146, p. 423-430 8 p.Research output: Contribution to journal › Article › peer-review
19 Scopus citations -
Kinetic Analysis of the Methyl-β-cyclodextrin-Mediated Intervesicular Transfer of Pyrene-Labeled Phospholipids
Sugiura, T., Ikeda, K. & Nakano, M., 2016/12/27, In: Langmuir. 32, 51, p. 13697-13705 9 p.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
Membrane-Spanning Sequences in Endoplasmic Reticulum Proteins Promote Phospholipid Flip-Flop
Nakao, H., Ikeda, K., Ishihama, Y. & Nakano, M., 2016/06/21, In: Biophysical Journal. 110, 12, p. 2689-2697 9 p.Research output: Contribution to journal › Article › peer-review
Open Access22 Scopus citations -
2015
High Membrane Curvature Enhances Binding, Conformational Changes, and Fibrillation of Amyloid-β on Lipid Bilayer Surfaces
Sugiura, Y., Ikeda, K. & Nakano, M., 2015/10/27, In: Langmuir. 31, 42, p. 11549-11557 9 p.Research output: Contribution to journal › Article › peer-review
51 Scopus citations -
PH-dependent promotion of phospholipid flip-flop by the KcsA potassium channel
Nakao, H., Ikeda, K., Iwamoto, M., Shimizu, H., Oiki, S., Ishihama, Y. & Nakano, M., 2015/01, In: Biochimica et Biophysica Acta - Biomembranes. 1848, 1, p. 145-150 6 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Self-reproduction of nanoparticles through synergistic self-assembly
Ikeda, K. & Nakano, M., 2015/01/13, In: Langmuir. 31, 1, p. 17-21 5 p.Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
2013
Effects of lipid membrane curvature on lipid packing state evaluated by isothermal titration calorimetry
Yokoyama, H., Ikeda, K., Wakabayashi, M., Ishihama, Y. & Nakano, M., 2013/01/22, In: Langmuir. 29, 3, p. 857-860 4 p.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
Secondary structural analysis of proteins based on 13C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database
Ikeda, K., Egawa, A. & Fujiwara, T., 2013/02, In: Journal of Biomolecular NMR. 55, 2, p. 189-200 12 p.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
2011
Combined use of replica-exchange molecular dynamics and magic-angle-spinning solid-state NMR spectral simulations for determining the structure and orientation of membrane-bound peptide
Ikeda, K., Kameda, T., Harada, E., Akutsu, H. & Fujiwara, T., 2011/07/28, In: Journal of Physical Chemistry B. 115, 29, p. 9327-9336 10 p.Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
Ganglioside-mediated aggregation of amyloid β-proteins (Aβ): Comparison between Aβ-(1-42) and Aβ-(1-40)
Ogawa, M., Tsukuda, M., Yamaguchi, T., Ikeda, K., Okada, T., Yano, Y., Hoshino, M. & Matsuzaki, K., 2011/03, In: Journal of Neurochemistry. 116, 5, p. 851-857 7 p.Research output: Contribution to journal › Article › peer-review
Open Access42 Scopus citations -
Mechanism of amyloid β-protein aggregation mediated by GM1 ganglioside clusters
Ikeda, K., Yamaguchi, T., Fukunaga, S., Hoshino, M. & Matsuzaki, K., 2011/07/26, In: Biochemistry. 50, 29, p. 6433-6440 8 p.Research output: Contribution to journal › Article › peer-review
96 Scopus citations -
2008
Controlled production of amyloid beta peptide from a photo-triggered, water-soluble precursor "click peptide".
Taniguchi, A., Skwarczynski, M., Sohma, Y., Okada, T., Ikeda, K., Prakash, H., Mukai, H., Hayashi, Y., Kimura, T., Hirota, S., Matsuzaki, K. & Kiso, Y., 2008/12/15, In: ChemBioChem. 9, 18, p. 3055-3065 11 p.Research output: Contribution to journal › Article › peer-review
37 Scopus citations -
Design, synthesis, and biophysical properties of a helical Aβ1-42 analog: Inhibition of fibrillogenesis and cytotoxicity
Matsuzaki, K., Okada, T., Tsukuda, M., Ikeda, K., Sohma, Y., Chiyomori, Y., Taniguchi, A., Nakamura, S., Ito, N., Hayashi, Y. & Kiso, Y., 2008/07/11, In: Biochemical and Biophysical Research Communications. 371, 4, p. 777-780 4 p.Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
Driving force of binding of amyloid β-protein to lipid bilayers
Ikeda, K. & Matsuzaki, K., 2008/06/06, In: Biochemical and Biophysical Research Communications. 370, 3, p. 525-529 5 p.Research output: Contribution to journal › Article › peer-review
48 Scopus citations -
Formation of Toxic Aβ(1-40) Fibrils on GM1 Ganglioside-Containing Membranes Mimicking Lipid Rafts: Polymorphisms in Aβ(1-40) Fibrils
Okada, T., Ikeda, K., Wakabayashi, M., Ogawa, M. & Matsuzaki, K., 2008/10/17, In: Journal of Molecular Biology. 382, 4, p. 1066-1074 9 p.Research output: Contribution to journal › Article › peer-review
111 Scopus citations -
2007
Formation of Toxic Fibrils of Alzheimer's Amyloid β-Protein-(1-40) by Monosialoganglioside GM1, a Neuronal Membrane Component
Okada, T., Wakabayashi, M., Ikeda, K. & Matsuzaki, K., 2007/08/10, In: Journal of Molecular Biology. 371, 2, p. 481-489 9 p.Research output: Contribution to journal › Article › peer-review
108 Scopus citations -
Inhibitors of amyloid β-protein aggregation mediated by GM1-containing raft-like membranes
Matsuzaki, K., Noguch, T., Wakabayashi, M., Ikeda, K., Okada, T., Ohashi, Y., Hoshino, M. & Naiki, H., 2007/01, In: Biochimica et Biophysica Acta - Biomembranes. 1768, 1, p. 122-130 9 p.Research output: Contribution to journal › Article › peer-review
Open Access75 Scopus citations -
2006
'Click peptide': A novel 'O-acyl isopeptide method' for peptide synthesis and chemical biology-oriented synthesis of amyloid β peptide analogues
Sohma, Y., Taniguchi, A., Yoshiya, T., Chiyomori, Y., Fukao, F., Nakamura, S., Skwarczynski, M., Okada, T., Ikeda, K., Hayashi, Y., Kimura, T., Hirota, S., Matsuzaki, K. & Kiso, Y., 2006/12, In: Journal of Peptide Science. 12, 12, p. 823-828 6 p.Research output: Contribution to journal › Article › peer-review
25 Scopus citations -
"Click peptide" based on the "O-acyl isopeptide method": Control of Aβ1-42 production from a photo-triggered Aβ1-42 analogue
Taniguchi, A., Sohma, Y., Kimura, M., Okada, T., Ikeda, K., Hayashi, Y., Kimura, T., Hirota, S., Matsuzaki, K. & Kiso, Y., 2006/01/25, In: Journal of the American Chemical Society. 128, 3, p. 696-697 2 p.Research output: Contribution to journal › Article › peer-review
103 Scopus citations -
Inhibition of the formation of amyloid β-protein fibrils using biocompatible nanogels as artificial chaperones
Ikeda, K., Okada, T., Sawada, S. I., Akiyoshi, K. & Matsuzaki, K., 2006/12/11, In: FEBS Letters. 580, 28-29, p. 6587-6595 9 p.Research output: Contribution to journal › Article › peer-review
129 Scopus citations